PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P27240_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 384aa    MW: 40888.4 Da    PI: 8.1548
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P27240_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.11.9e-3297152359
            ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                            ++rY+eCl+NhAas+Ggh++DGCgEfmp+ g+ ++++alkCaACgCHR+FHR+e e 
  GSMUA_Achr6P27240_001  97 SIRYRECLRNHAASIGGHVLDGCGEFMPE-GDPSSPEALKCAACGCHRSFHRKEAEG 152
                            689*************************8.7779*******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-1998151IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.9E-3098150IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-2899149IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.557100149IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.608.7E-30185254IPR009057Homeodomain-like
SuperFamilySSF466891.79E-18188254IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-25193249IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MRSSTALSFN ARPPIRGSAF SKPVLSPSSS LISLRGGGGN GSGTSTAENV SLFGSTTPSS  60
TAAAVDVLYQ SAARNTDPAP VSGATAPSNT KAAASASIRY RECLRNHAAS IGGHVLDGCG  120
EFMPEGDPSS PEALKCAACG CHRSFHRKEA EGDAAAADSY YRGAARQFQF GTTESSSEER  180
MTAGAPTPAT TPRKRFRTKF TMEQKEKMLA FAERMGWRIQ KQDEGLVEQF CAETGVRRQV  240
LKVWMHNNKH LIRKPQQPPG QDEVLGVPKK QPPLLLVAGA VAAPVIGGRV TVEWLLGGVD  300
ELDVLEEVLV VALHFFDGLV ADGPGDVHPA IRGVEVEVGE RHLEALVLLL GPRVLELARA  360
ALGAGRHLGY IWNEMEGSLI GSRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-291942501874ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018683342.11e-158PREDICTED: zinc-finger homeodomain protein 2-like
TrEMBLM0TAL90.0M0TAL9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P27240_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-45homeobox protein 22