PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P26330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 294aa    MW: 31541.7 Da    PI: 5.3514
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P26330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.67e-18190224135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C +C++ kTp+WR gp g+ktLCnaCG++y++ +l
  GSMUA_Achr6P26330_001 190 CLHCQAEKTPQWRAGPMGPKTLCNACGVRYKSGRL 224
                            99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.519184220IPR000679Zinc finger, GATA-type
SMARTSM004013.5E-16184234IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14184221IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577166.18E-15186247No hitNo description
CDDcd002023.40E-12189240No hitNo description
PfamPF003201.6E-15190224IPR000679Zinc finger, GATA-type
PROSITE patternPS003440190215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEAPEYLQGG RGTPHCAPEK GAGGDHFVVE DLLDFSNGGE EGDDWGFDAA AANSADDSST  60
VTAVECCSNS SSSRREPHFG CEPAFRSFDD ACLSGDLCGP HEELAELEWL SNFVEESFSG  120
EDVHRPQLVS GTNPTTSFWS SRALVFSPST ATASSPELEL IKPPSAVPGN KAKKQASAAV  180
VGSPREGQRC LHCQAEKTPQ WRAGPMGPKT LCNACGVRYK SGRLVPEYRP AASPTFVPSK  240
HSNSHRKVLE LQHHKEQEQP QPQQQLLLHD GGAAAAGGDG YLYRHVGPDF RPLT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406167.11e-176PREDICTED: GATA transcription factor 9-like
SwissprotO826322e-60GATA9_ARATH; GATA transcription factor 9
TrEMBLM0TAC80.0M0TAC8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P26330_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-51GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]