PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P22120_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 398aa    MW: 43014 Da    PI: 7.8097
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P22120_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.46.2e-32128182358
            ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                            +v+YkeCl+NhAa++Ggh++DGCgEfmp+ g  +t++alkCaACgCHR+FHR++ +
  GSMUA_Achr6P22120_001 128 SVKYKECLRNHAAAIGGHVLDGCGEFMPE-GGPSTPEALKCAACGCHRSFHRKDGD 182
                            799*************************9.7778*******************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.2E-29129180IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-17129187IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.6E-28130180IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.434131180IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.16E-17215278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-29217280IPR009057Homeodomain-like
TIGRFAMsTIGR015652.6E-27218274IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEFRNLDGDL GLPPPSSPSS SPLVYNPPPI RGSAFSKPIL PLSSSLIPSR GGGGCCDTAA  60
TGGERNGASF GSSTIPTATE ENSSSHSNTR NPDPAPISVL SPVGAGASLP NSIQSAEVKT  120
AVTTVDASVK YKECLRNHAA AIGGHVLDGC GEFMPEGGPS TPEALKCAAC GCHRSFHRKD  180
GDTDSHPYNQ QKPGGTTTES SSEERINAGA PTPAIALRKR FRTKFTAEQK EKMLAFAERV  240
GWRIQKQEEA VVEQFCAEVG VRRQVLKVWM HNNKHANTKQ QQLQPPPPPV EQDQLQVQQH  300
QEQQLPVKVR INPPSSQFSG RDCLRSESFQ VLCGGCTCGQ RTSQRGYRSS LEVSRFFYDI  360
NSCIYCSFHV FDIDHSYEVK PHSNALNSFL GSKDGTVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-292192761875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405659.10.0PREDICTED: zinc-finger homeodomain protein 6-like
TrEMBLM0T9600.0M0T960_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P22120_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-56homeobox protein 22