PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P18130_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 293aa    MW: 32314 Da    PI: 7.5717
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P18130_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.41.5e-081431931363
                            HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1  13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                            NR +A rs +RK  ++ eLe+kv++L++e ++L  +l  l+     l++e+
  GSMUA_Achr6P18130_001 143 NRQSAARSKERKIRYTNELERKVQTLQTEATTLSAQLTLLQRDTTDLTAEN 193
                            ****************************************99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.9E-11127195IPR004827Basic-leucine zipper domain
CDDcd147035.51E-21132185No hitNo description
SuperFamilySSF579593.09E-9140187No hitNo description
PfamPF001701.2E-6141192IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.8E-9142189No hitNo description
PROSITE profilePS502179.553143196IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEPNGAPPGQ ATAGHRFGQI PPPNPRGGGG GHRRALSETV LRLPDDLLFD TDPDFGISDI  60
DFPSLSDDNL TVPGAHLRSL SQERRGHHRR SGSMDGSFSP FEGDSAATLS DYAKKAMTAD  120
KLAELALIDP RRAKRHHLSI LANRQSAARS KERKIRYTNE LERKVQTLQT EATTLSAQLT  180
LLQRDTTDLT AENRELKLRL QAMEQQAQLH DALNDALREE VQRLKIATGQ LPSANGNPFN  240
GGLQHSVSNY YAHPQQLPPQ SLRHGQHLHP SQMQISSNGQ SLVHSPSDPM DFM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404907.10.0PREDICTED: transcription factor RF2b
SwissprotQ6S4P43e-60RF2B_ORYSJ; Transcription factor RF2b
TrEMBLM0T8110.0M0T811_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P18130_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19253892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.12e-43VIRE2-interacting protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]