PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P10390_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

CAMTA

Protein Properties

Length: 1065aa MW: 120302 Da PI: 5.9703

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P10390_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	181.2	1.2e-56	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 l+ ++rwl++ ei++iL n++k++++ e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+e GSMUA_Achr6P10390_001 20 LEAQHRWLRPAEICEILRNYQKFRIAPEPPNKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGE 107 5679********************************************************************************** PP CG-1 90 enptfqrrcywlLeeelekivlvhylevk 118 en++fqrr+yw+Lee++ +ivlvhylevk GSMUA_Achr6P10390_001 108 ENENFQRRSYWMLEEDFMHIVLVHYLEVK 136 ************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.389	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	8.6E-80	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.4E-50	21	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	3.5E-6	479	565	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	7.62E-18	480	566	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.4E-6	480	558	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	3.3E-16	660	779	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.24E-16	672	777	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.47E-11	681	775	No hit	No description
PROSITE profile	PS50297	16.308	683	777	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF52540	1.09E-8	886	941	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.073	890	912	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.444	891	920	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.002	892	911	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.011	913	935	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.725	914	938	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	5.5E-4	916	935	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1065 aa Download sequence Send to blast
MAETRRFSLT PQLDIEQILL EAQHRWLRPA EICEILRNYQ KFRIAPEPPN KPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEENE NFQRRSYWML 120 EEDFMHIVLV HYLEVKVAIN LSSHGHKPSY SRTRDVEEVP RVNHMDSPVC SNSITSQSQL 180 PSQGTDVDSP NSAHTSEYED AESDNHPTSS RYYPFLRMQQ YDAGQMMSVQ LLDPYVSDPS 240 VDSDFQGTHD AEPKSDFYSV TQEDISRVFD ETGLGLSFRG SKTQYDLTSW DEVLEHCATS 300 FQMPSFQSSV GFTEPPVVEN NNKLESSILG DLYDGNHSTR PDGSGVLDKP AWQMSIYWYH 360 HQIRYKLSNP DSESAVTSNI NVESGTSVSE SVDCPSIVKQ PSLDLSIIEG EGLKKYDSFT 420 RWMSKELGEV DDSHMKSNSG VYWSAVGSDN VVEDSSISNH EHLDAYIMSP SLSKDQLFSI 480 IDFSPNWAYT GLETKVLITG TFLKKKEDLG KCRWSCMFGE VEVPAEVVGD GILRCHAPPH 540 KSGRVPFYVT CSNRLACSEV REFEFRGSNA HPVENIGSCI YNTNEMLLHI RLDKLLSLGP 600 IDYQKIDPEI FRRKAHVRSK ISSIMMDAAD ECSSLLKLAE REGCTADYVK DQLLETLLRE 660 KLVTWLLHKV AEDGKGPSMW DTEGQGVIHL SAALDYYWAI KPIVTAGVNI NFRDVHGWTA 720 LHWAAFCGRE WTVGTLIAMG AAPGLLTDPS PEFPSGRTPA DLASANGHKG IAGFLAESSL 780 TSHLLALTID TKESDLPEIA SLTGIEDDAE RSALEVAEGD MQAGLSLKDT LSAVRNASQA 840 AARIYQVFRV QSFHRKKIVE YGDDKSGISD EHALSLISIK SHKSGHYDTP LHAAAIRIQN 900 KFRGWKGRKE FLIIRQRIVK IQAHVRGHQV RKRYRKIVWS VGIVEKAILR WRRKGSGLRG 960 FRSEGLLEGT TMQCQPKKED DYDFLQEGRR QTEARMQKAL ARVKSMVQYP EARDQYRRLL 1020 AVVTDFQESK AMEESVDNES EENADGDFMV ELEEFLEGDT LMPSA

Sequence ? help Back to Top

Protein Sequence Length: 1065 aa Download sequence Send to blast

MAETRRFSLT PQLDIEQILL EAQHRWLRPA EICEILRNYQ KFRIAPEPPN KPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEENE NFQRRSYWML  120
EEDFMHIVLV HYLEVKVAIN LSSHGHKPSY SRTRDVEEVP RVNHMDSPVC SNSITSQSQL  180
PSQGTDVDSP NSAHTSEYED AESDNHPTSS RYYPFLRMQQ YDAGQMMSVQ LLDPYVSDPS  240
VDSDFQGTHD AEPKSDFYSV TQEDISRVFD ETGLGLSFRG SKTQYDLTSW DEVLEHCATS  300
FQMPSFQSSV GFTEPPVVEN NNKLESSILG DLYDGNHSTR PDGSGVLDKP AWQMSIYWYH  360
HQIRYKLSNP DSESAVTSNI NVESGTSVSE SVDCPSIVKQ PSLDLSIIEG EGLKKYDSFT  420
RWMSKELGEV DDSHMKSNSG VYWSAVGSDN VVEDSSISNH EHLDAYIMSP SLSKDQLFSI  480
IDFSPNWAYT GLETKVLITG TFLKKKEDLG KCRWSCMFGE VEVPAEVVGD GILRCHAPPH  540
KSGRVPFYVT CSNRLACSEV REFEFRGSNA HPVENIGSCI YNTNEMLLHI RLDKLLSLGP  600
IDYQKIDPEI FRRKAHVRSK ISSIMMDAAD ECSSLLKLAE REGCTADYVK DQLLETLLRE  660
KLVTWLLHKV AEDGKGPSMW DTEGQGVIHL SAALDYYWAI KPIVTAGVNI NFRDVHGWTA  720
LHWAAFCGRE WTVGTLIAMG AAPGLLTDPS PEFPSGRTPA DLASANGHKG IAGFLAESSL  780
TSHLLALTID TKESDLPEIA SLTGIEDDAE RSALEVAEGD MQAGLSLKDT LSAVRNASQA  840
AARIYQVFRV QSFHRKKIVE YGDDKSGISD EHALSLISIK SHKSGHYDTP LHAAAIRIQN  900
KFRGWKGRKE FLIIRQRIVK IQAHVRGHQV RKRYRKIVWS VGIVEKAILR WRRKGSGLRG  960
FRSEGLLEGT TMQCQPKKED DYDFLQEGRR QTEARMQKAL ARVKSMVQYP EARDQYRRLL  1020
AVVTDFQESK AMEESVDNES EENADGDFMV ELEEFLEGDT LMPSA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009404048.1	0.0	PREDICTED: calmodulin-binding transcription activator 3 isoform X2
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	M0T5T8	0.0	M0T5T8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P10390_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP608	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]