PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P08600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 347aa    MW: 39471.7 Da    PI: 7.0207
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P08600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1812.9e-56161431129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdee++++yL +kv ++ +++ +++ evd++k+ePwdLp+k++ +ekewyfF++rd+ky+tg r+nrat++gyWkatgk
  GSMUA_Achr6P08600_001  16 LPPGFRFHPTDEEIITHYLSQKVIDRGFSA-RAMGEVDLNKCEPWDLPSKARMGEKEWYFFCQRDRKYPTGMRTNRATEAGYWKATGK 102
                            79**************************99.89***************999999********************************** PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            dke+++ ++ lvg+kktLvfy+grap+g+kt+Wvmhe+rle
  GSMUA_Achr6P08600_001 103 DKEIYRGRRVLVGMKKTLVFYRGRAPRGHKTNWVMHEFRLE 143
                            ******99999***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-6312168IPR003441NAC domain
PROSITE profilePS5100559.11716167IPR003441NAC domain
PfamPF023657.4E-2917142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MVDVSVLNMD DDCMDLPPGF RFHPTDEEII THYLSQKVID RGFSARAMGE VDLNKCEPWD  60
LPSKARMGEK EWYFFCQRDR KYPTGMRTNR ATEAGYWKAT GKDKEIYRGR RVLVGMKKTL  120
VFYRGRAPRG HKTNWVMHEF RLEGKFPFPG VPKSAKDEWV VCRVFHKNMG ITRSPPPPGS  180
ERIDSLGKDL FDSTALPPLM DPPYLSSDAR PSSCFIDKEE GFDFKDIPSF SAMMGMEDQV  240
SSNPPQSSIF YSQVLAQSPY CSFPGHLHQQ QAMTRALAAD HDASSAIRRH CKMEQCWNNS  300
MGCPSQDTGL STDRNTEISS SMVSNHFGDF DNPSCGPLIN LDNIWKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-521416818169NAC domain-containing protein 19
3swm_B3e-521416818169NAC domain-containing protein 19
3swm_C3e-521416818169NAC domain-containing protein 19
3swm_D3e-521416818169NAC domain-containing protein 19
3swp_A3e-521416818169NAC domain-containing protein 19
3swp_B3e-521416818169NAC domain-containing protein 19
3swp_C3e-521416818169NAC domain-containing protein 19
3swp_D3e-521416818169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403845.10.0PREDICTED: NAC domain-containing protein 92-like
RefseqXP_009403846.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FLJ21e-102NC100_ARATH; NAC domain-containing protein 100
TrEMBLM0T5A90.0M0T5A9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P08600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-104NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]