PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P07620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 488aa    MW: 53053.5 Da    PI: 7.3433
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P07620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.4e-30298356259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d +++++tYeg+H h+
  GSMUA_Achr6P07620_001 298 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCADDRSILITTYEGTHSHP 356
                            7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-33282358IPR003657WRKY domain
SuperFamilySSF1182909.15E-28290358IPR003657WRKY domain
PROSITE profilePS5081128.598292358IPR003657WRKY domain
SMARTSM007742.5E-36297357IPR003657WRKY domain
PfamPF031067.1E-27299356IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDGRGSAAAG LTLATASSLL LTSPSHQNQP MNSDHHRSGV GFKDAHVAEA STPLPRENRA  60
VVISEMDFFS NEKKKMTMTS CAAPELDLKV PSLCIKREDL SVNTGLHLSN TRSDLSTVDD  120
GMSPPEDDKE GKSELTAVQA ELARMNQENN KLRLMLNQLT TNYNALQMQL VALTQQRRTS  180
GNPQEPENKK MEEKSHDEHD GAVVPRRQFM DLGPGGDIDE PSHSSSTSRD PCLSLRSHTE  240
VSLDHEKHVR EDDRAEHGWN SNKTPRLAPS KSAERAEDAT MRKARVSVRA RSEAPTITDG  300
CQWRKYGQKM AKGNPCPRAY YRCTMATGCP VRKQVQRCAD DRSILITTYE GTHSHPLPPA  360
AIPMASTTSA AASMLVSGFS GLQMSPEMDP AQLAHPKAQS VAPPSLADTV SAVITADPNF  420
TAAVAAAISS IIGGAGNHRT GNDDNSHSKP IILSFLFFSL VAYYFRGSKT KLLPHSCHHF  480
VHASALDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-21284360176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403740.20.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC33e-86WRK42_ARATH; WRKY transcription factor 42
TrEMBLM0T5110.0M0T511_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P07620_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52653656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.11e-80WRKY DNA-binding protein 31