PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr6P07260_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 199aa MW: 21998.5 Da PI: 10.3525 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 36 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl GSMUA_Achr6P07260_001 36 KGAWTKEEDQKLISYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 83 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58.8 | 1.2e-18 | 89 | 133 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ GSMUA_Achr6P07260_001 89 RGNFTEEEDELIIKLHGLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 133 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-25 | 27 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.649 | 31 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.95E-30 | 35 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-14 | 35 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-16 | 36 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.75E-11 | 38 | 83 | No hit | No description |
PROSITE profile | PS51294 | 29.043 | 84 | 138 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-28 | 87 | 138 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-17 | 88 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-17 | 89 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.71E-13 | 91 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MILKGWSQCA CRSHGSPTGC AGMGRSPCCE KAHTNKGAWT KEEDQKLISY IKAHGEGCWR 60 SLPKAAGLLR CGKSCRLRWI NYLRPDLKRG NFTEEEDELI IKLHGLLGNK WSLIAGRLPG 120 RTDNEIKNYW NTHIKRKLLS RGIDPQTHGP INGGATAAFA APHPSETAVP KAPFVCVAIW 180 VSRAAKLVAA TPPKTRRMY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-31 | 36 | 138 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009403695.1 | 1e-107 | PREDICTED: myb-related protein 308 | ||||
Swissprot | P81393 | 3e-88 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | M0T4X5 | 1e-145 | M0T4X5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P07260_001 | 1e-146 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09460.1 | 4e-90 | myb domain protein 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|