PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P05710_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 340aa MW: 37749.1 Da PI: 7.1948 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.1 | 4.1e-29 | 120 | 181 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqKe+ g+++prsY+rCt++ gC + k+v+rs++dp+v++itY+geH+++ GSMUA_Achr6P05710_001 120 LDDGHSWRKYGQKEILGAKYPRSYFRCTHRntvGCFAMKQVQRSDDDPSVFDITYRGEHTCP 181 59***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.5E-28 | 108 | 182 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.951 | 115 | 183 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-25 | 118 | 182 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-41 | 120 | 182 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-27 | 121 | 181 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MDLSSLVEVL MHGEEQLRQL EACLDVHSPV EHKKQLVLQA QSHFKRAISM AKSIDHERFR 60 QGPGASAAAL DSPRSNSGGS DNSDKALKEQ ERREMCKKRK TLPKWTSQIR ISSSEGVDGL 120 DDGHSWRKYG QKEILGAKYP RSYFRCTHRN TVGCFAMKQV QRSDDDPSVF DITYRGEHTC 180 PQKPRTVATS ALHRPDIHQS QQRPRQDQQL LLSFQTSLKV KTEGSSFEDP DQNSPFSFSS 240 TPMSTLCTPP TPENKFMGSF SAAFPSPATS ESKHFSPSPC RVSSFGDAPP LHITESDLSD 300 FISATTSAAT SSAMDIAFML DSVGFDPAFH FDASSFLHNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-22 | 117 | 180 | 5 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009403521.1 | 0.0 | PREDICTED: probable WRKY transcription factor 41 | ||||
TrEMBL | M0T4G9 | 0.0 | M0T4G9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P05710_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 9e-42 | WRKY family protein |