PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P04670_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 288aa    MW: 31545.6 Da    PI: 7.519
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P04670_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.81.8e-4361051100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrrkC+++Cv+apyfp +qp kfa+vh++FGasnv+k+l++l++ +reda++sl+yeAear+rdPvyG+vg i+ lq++l+
  GSMUA_Achr6P04670_001   6 PCAACKFLRRKCTPGCVFAPYFPPDQPTKFAYVHRVFGASNVSKILSDLNPAQREDAANSLAYEAEARLRDPVYGCVGYISFLQHKLK 93 
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            ql+++l  +k+e
  GSMUA_Achr6P04670_001  94 QLQHDLYNAKKE 105
                            *****9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.875106IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-436103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSSNSPCAAC KFLRRKCTPG CVFAPYFPPD QPTKFAYVHR VFGASNVSKI LSDLNPAQRE  60
DAANSLAYEA EARLRDPVYG CVGYISFLQH KLKQLQHDLY NAKKELSSYI GPAALGPFLP  120
HHHHQRQHHL LPGPSPSSTA YGIPGMGVEM GLGLAAPGTS QQSQILMREE QQPPMAEAQQ  180
MAMAHAAAAR EQEMMMRRYE QQQELARFST TGFPDGGRGY NQIGSGTMVA MATEPHPGMD  240
LVPSPLSFEG PFPAQHFTGQ HHHHPPQMQP EHHRTGSDEG RSGIGPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-4831098114LOB family transfactor Ramosa2.1
5ly0_B7e-4831098114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403403.10.0PREDICTED: LOB domain-containing protein 36-like
TrEMBLM0T4650.0M0T465_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P04670_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-55ASYMMETRIC LEAVES 2-like 1