PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P03500_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 515aa    MW: 56708.6 Da    PI: 7.989
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P03500_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.3e-32120177260
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                            +DgynWrKYGqK+vkgse+prsYY+Ct+ +C+vkkkvers+ +++++ei+Y+geHnh+k
  GSMUA_Achr6P03500_001 120 EDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCQVKKKVERSQ-EGHFTEIIYKGEHNHPK 177
                            8****************************************.***************85 PP
2WRKY105.43e-33308366159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+d k v++tYeg+Hnh+
  GSMUA_Achr6P03500_001 308 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCNVRKHVERAAHDLKSVITTYEGKHNHD 366
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.502114178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.2E-29115178IPR003657WRKY domain
SuperFamilySSF1182907.72E-26118178IPR003657WRKY domain
SMARTSM007748.6E-36119177IPR003657WRKY domain
PfamPF031068.2E-25120176IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37293368IPR003657WRKY domain
SuperFamilySSF1182903.01E-29300368IPR003657WRKY domain
PROSITE profilePS5081137.711303368IPR003657WRKY domain
SMARTSM007741.3E-38308367IPR003657WRKY domain
PfamPF031062.3E-25309366IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MRRRNLDVTS FFCPLREKKL RFPSHRVKKG DGATSSPHFF CPHGGKKHCL NDARFLLPAT  60
SLRLLLPAQM RRKFNLQESK DAIPDSFMSS DRSLPLDEQQ EGDRDLRGEL SSVAVGAPAE  120
DGYNWRKYGQ KQVKGSEYPR SYYKCTHLNC QVKKKVERSQ EGHFTEIIYK GEHNHPKPPP  180
NRRSGVLLSN PFNDAEIDGH DWQGDLEATS SAHVTAECCD PSAAVQQRPD GQRLSSDAID  240
VSSTMSSGED EDDQATHGSV SLGCDGEGDE TESKRPKLDT SAIEMNAASR AVREPRVVVQ  300
TTSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTHPGCN VRKHVERAAH DLKSVITTYE  360
GKHNHDVPAA RNSGHPSSSP SNTTSNAGPQ PHGLLPRAES TQGGLVRFEG HAPLGTFGLP  420
GMEQLRPPTS FTFAMGQPGL MNLTMAGFGP LAPTKMSVPP SVHSYIGHGP PVEGLMIPKG  480
EPNEEPMPET RLPMLNGGPV YHQMTMNGVP LRPQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-38120369878Probable WRKY transcription factor 4
2lex_A8e-38120369878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11727KKLRFPSHRVK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0508698e-48KM050869.1 Astrocaryum standleyanum isolate PL101 WRKY transcription factor 12 (WRKY12) gene, partial cds.
GenBankKM0508708e-48KM050870.1 Astrocaryum standleyanum isolate PL117 WRKY transcription factor 12 (WRKY12) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403265.10.0PREDICTED: probable WRKY transcription factor 34 isoform X3
RefseqXP_009403266.10.0PREDICTED: probable WRKY transcription factor 34 isoform X3
RefseqXP_018683620.10.0PREDICTED: probable WRKY transcription factor 34 isoform X3
SwissprotQ9FG771e-115WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLM0T3U80.0M0T3U8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P03500_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-116WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]