PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P02730_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 165aa    MW: 18461.7 Da    PI: 5.8338
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P02730_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.92.1e-079382555
                    AP2 25 ngkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ng +++++lg++ ++e+Aa+a++ a++k++g
  GSMUA_Achr6P02730_001  9 NG-CASVYLGSYVSEEMAARAHDLAALKYWG 38
                           23.6*************************98 PP
2AP256.76e-1883137155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV++++k+g+W A+I  +   g  k  k ++lg+f+t+eeAa+a++ a+ +l+g
  GSMUA_Achr6P02730_001  83 SVYRGVTRRRKDGKWQARIGRV---GdlKDaKDIYLGTFDTEEEAAEAYDIAAIQLRG 137
                            78*****************998...664458************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.14148IPR001471AP2/ERF domain
SMARTSM003802.1E-4554IPR001471AP2/ERF domain
PfamPF008471.9E-4938IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-71149IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-81349IPR001471AP2/ERF domain
PfamPF008471.3E-1183137IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-1883147IPR016177DNA-binding domain
CDDcd000189.95E-2283147No hitNo description
Gene3DG3DSA:3.30.730.108.7E-2084146IPR001471AP2/ERF domain
SMARTSM003805.6E-2684151IPR001471AP2/ERF domain
PROSITE profilePS5103219.82384145IPR001471AP2/ERF domain
PRINTSPR003671.8E-58596IPR001471AP2/ERF domain
PRINTSPR003671.8E-5127147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MIIANGCCNG CASVYLGSYV SEEMAARAHD LAALKYWGPG PATKLNFPVS DYENELENMK  60
TMSQEEFVAY VRRKSSCFSR GASVYRGVTR RRKDGKWQAR IGRVGDLKDA KDIYLGTFDT  120
EEEAAEAYDI AAIQLRGVHA VTNFDLSNYC EGGTRRPDDS FRLEM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17192RRKSSCFSRGASVYRGVTRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403174.11e-109PREDICTED: AP2-like ethylene-responsive transcription factor AIL7 isoform X1
RefseqXP_018683790.11e-109PREDICTED: AP2-like ethylene-responsive transcription factor AIL7 isoform X1
SwissprotQ6PQQ39e-57AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLM0T3M11e-120M0T3M1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P02730_0011e-121(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.13e-54AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]