PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P01740_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 1039aa    MW: 116022 Da    PI: 6.9837
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P01740_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.76.1e-20156246186
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+
  GSMUA_Achr6P01740_001 156 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVL 241
                            99*****************************954.4444.49********************************************** PP

                            EEE-S CS
                     B3  82 Fkldg 86 
                            F + +
  GSMUA_Achr6P01740_001 242 FIRYN 246
                            *8544 PP
2Auxin_resp1163.4e-38317400183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+++s+F+v+YnPr+s+seFv++++k++ka++ ++vs+GmRf+m+fete+s +rr++Gt++ +sdld vrW+nS+Wr+Lk
  GSMUA_Achr6P01740_001 317 AAHAAANNSPFTVFYNPRTSPSEFVIPFAKYQKAIYsNQVSLGMRFRMMFETEESGTRRYMGTITEISDLDVVRWKNSQWRNLK 400
                            79*********************************989*******************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-38145247IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-34149247IPR015300DNA-binding pseudobarrel domain
CDDcd100174.51E-18155254No hitNo description
PROSITE profilePS508639.7156257IPR003340B3 DNA binding domain
PfamPF023623.2E-18156251IPR003340B3 DNA binding domain
SMARTSM010191.4E-14156259IPR003340B3 DNA binding domain
PfamPF065071.2E-33317400IPR010525Auxin response factor
PfamPF023091.2E-7910996IPR033389AUX/IAA domain
PROSITE profilePS5174526.42912995IPR000270PB1 domain
SuperFamilySSF542772.65E-6925988No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1039 aa     Download sequence    Send to blast
MVVAGEKTTI NKELWHACAG PLVALPPVGS LVVYFPQGHS EQVMQNTRYK EPTQLTGFFH  60
RSFSYSPVLF SCNAIFSFTI TLLSSMQKDI DAHIPNYPNL PSKLICLLHN VTLHADPDTD  120
EVYAQITLQP VNTYDKEALQ TSDLALKQTR PQTEFFCKTL TASDTSTHGG FSVPRRAAEK  180
IFPPLDFSMQ PPAQELQARD LHDNLWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV  240
LFIRYNVLSC FSFFTCKHMI SYISFILFLL FPHFSSIIFS EFYILFHSIR RANRQPTNLS  300
SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRTSPSEF VIPFAKYQKA IYSNQVSLGM  360
RFRMMFETEE SGTRRYMGTI TEISDLDVVR WKNSQWRNLK VGWDECAAGE RPSRVSIWNI  420
EPIAAPFFIC PPPFFRKRPR QPGIPDDESS EMENLFKRAI PWLNEEICIK DSQSQNAIMP  480
GLSLAQWMSM QQNPSLANSA MQNECLRSLS GPVVQNLGST SPLTQNQASL LQSQSLVQPS  540
VQQQCPVIQN PQVLQTSLLQ TQPQRPEQPV PLQQQQSRIP VDIANQPNKQ LQVSDPRIQF  600
QLVQKLQQQP SLLSQPKVQE TQLHQIQEQQ KTLLEVSQQL LDSPRSLAQP HVTPRQGAKM  660
TSPGVQLPQS LQTQSQQKLQ QQQVLLADLP GITFPATSAT NPILANGSSL LATGGAHSST  720
LNWTRLRNPV STEKNQLVTM LSPSSFEASV ANLNIAKELP KAVQDLKPSV PISKVQSQGA  780
VDPQAYINDA VQLDYLDTTS SATSVCLSQT GTFPLTSFNQ PSMLRDIPPD DDVQGTDPRS  840
SALMGVNNHI PGNMISNYNI SNDVHQELSS SLVSHSFGVP DLAFNSIDST INENSLLNAS  900
CWAPAPPLQR MRTYTKVHKR GAVGRSIDIT RYSGYDELKH DIARMFSIGQ LEDLQKIGWK  960
LVYVDHEKDV LLVGDDPWEE FVNCVQCIKI LSPQEVQQMS LTGDLANNIL PKQACSSSEG  1020
GNGWMGQRDH NSGSYDHLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-149642147388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403030.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_009403031.10.0PREDICTED: auxin response factor 19-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLM0T3C20.0M0T3C2_MUSAM; Auxin response factor
STRINGGSMUA_Achr6P01740_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19