PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P01310_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 280aa MW: 30947.7 Da PI: 9.598

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P01310_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105	4.4e-33	29	83	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWtpeLH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl GSMUA_Achr6P01310_001 29 KHRLRWTPELHDRFVDAVAKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 83 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.128	26	86	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-32	26	84	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-24	29	84	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.97E-16	29	84	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-10	31	82	IPR001005	SANT/Myb domain
Pfam	PF14379	8.6E-22	125	168	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MMRHHRTRSA GAEASAYEAA GATLSRDPKH RLRWTPELHD RFVDAVAKLG GPDKATPKSV 60 LRLMGMKGLT LYHLKSHLQK YRLGRQTGRE TKAETSSKGS NPADTSYSAD SSVFGGPESV 120 GGTPLAEAIR YQLEVQRKMN EQLEVQKKLQ TRIEAQGRYL QAILEKALNS LSLDMNASAS 180 VEATSSSQLT DCNLALSGSM DDATKNSTSL KRSNTSAFQL HREGRQEHED SKLGNDAGTV 240 LLDLNAKGSY QLFGFFGSPY AHLLCYRTID LEDKLDERRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-21	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009402983.1	0.0	PREDICTED: myb family transcription factor PHL11-like isoform X2
Swissprot	C0SVS4	4e-63	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	M0T379	0.0	M0T379_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P01310_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	3e-63	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]