PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P29220_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WOX
Protein Properties Length: 200aa    MW: 22334 Da    PI: 8.0435
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P29220_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.47.7e-21867357
                           --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           +R+++t+eql +Lee++++  r+p+a+++++++++l    +++ ++V++WFqN++a++++
  GSMUA_Achr5P29220_001  8 TRWCPTPEQLMILEEMYASgVRNPNASQIQQITAHLsfygKIEGKNVFYWFQNHKARDRQ 67
                           8*****************99*************************************996 PP
2Wus_type_Homeobox120.85.6e-39668264
      Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                           ++tRW+PtpeQ++iLee+y sG+r+Pn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk
  GSMUA_Achr5P29220_001  6 STTRWCPTPEQLMILEEMYASGVRNPNASQIQQITAHLSFYGKIEGKNVFYWFQNHKARDRQK 68
                           689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.284368IPR001356Homeobox domain
SMARTSM003894.9E-6572IPR001356Homeobox domain
SuperFamilySSF466891.67E-11867IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-8867IPR009057Homeodomain-like
PfamPF000461.4E-18867IPR001356Homeobox domain
CDDcd000865.72E-6868No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSQTNSTTRW CPTPEQLMIL EEMYASGVRN PNASQIQQIT AHLSFYGKIE GKNVFYWFQN  60
HKARDRQKLR HKNLPHPSEE ASPPTSVHHE NPSSFLTQVL VSSSYVLVPL IIANREHCHR  120
IDATTQEMNL VGKLESAAGE RQEAAVTASS SMEGDHPQWA DVGLTVSSCF KPLKTLDLFP  180
TKHECSSSSS KSSSRSKSTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402755.11e-116PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLM0T2P61e-148M0T2P6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P29220_0011e-148(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-40WOX family protein