PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P28350_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 237aa MW: 26859.2 Da PI: 8.1065 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.2 | 1e-14 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W ++Ed++lv+ v+++G ++W+ a+ g++R++k+c++rw +yl GSMUA_Achr5P28350_001 10 KGPWMEQEDLQLVRFVRLFGERRWDYLAKVSGLNRSGKSCRLRWVNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.1 | 1.8e-17 | 64 | 106 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 gr+T+eE+ l +++++++G++ W++Ia++++ gRt++++k++w++ GSMUA_Achr5P28350_001 64 GRMTPEEEHLVLELHAKWGNR-WSRIAQCLP-GRTDNEIKNYWRT 106 89*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.811 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.46E-27 | 9 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-11 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-13 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-18 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.33E-8 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 24.882 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-16 | 64 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.16E-11 | 65 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 65 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAAKNEETRK GPWMEQEDLQ LVRFVRLFGE RRWDYLAKVS GLNRSGKSCR LRWVNYLHPG 60 LRHGRMTPEE EHLVLELHAK WGNRWSRIAQ CLPGRTDNEI KNYWRTRMRK KAQERRMSTS 120 ASPSPSSSSS NISSSANEPP PDLVMKKRDG MESVAVGSSL TLGFGTNEGV MAYSMDQIWD 180 EIAATDRVSG LSTEEHKHGA RSVASPLWEH CSASPWKVDD EEFEMPTPAD GLVISSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-26 | 7 | 112 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-26 | 5 | 112 | 53 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-26 | 5 | 112 | 53 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-26 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-26 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009402364.1 | 1e-176 | PREDICTED: myb-related protein MYBAS1-like isoform X2 | ||||
Swissprot | Q53NK6 | 1e-74 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | M0T2F9 | 1e-175 | M0T2F9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P28350_001 | 1e-176 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 2e-67 | myb domain protein 59 |
Publications ? help Back to Top | |||
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