PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P26880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 777aa    MW: 88020.4 Da    PI: 7.4203
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P26880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP109.22.6e-3488165178
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            +Cqv++Cead+ e+k yhrrh+vC  ++ a++v+++g+++r+CqqC++fh+ls+fDe+krsCrr+L++hn+rrr+++a
  GSMUA_Achr5P26880_001  88 RCQVPRCEADIGELKGYHRRHRVCLRCACASSVVLDGESKRYCQQCGKFHMLSDFDEGKRSCRRKLEHHNKRRRRRHA 165
                            6*************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.1E-2586150IPR004333Transcription factor, SBP-box
PROSITE profilePS5114128.81286163IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.58E-3187168IPR004333Transcription factor, SBP-box
PfamPF031101.0E-2489162IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MGASDSPMPP LPPHTATLPL VRPPSALAGE GSALARKRDP RFVCSNFVAG RTPCSCPAEK  60
EDAGTTGAAG SERKRARKAR AAPVAACRCQ VPRCEADIGE LKGYHRRHRV CLRCACASSV  120
VLDGESKRYC QQCGKFHMLS DFDEGKRSCR RKLEHHNKRR RRRHADSISM TEQDKEPQKG  180
LQPNECGTGV NKMLNGLACQ TDEKVVTDKL IERNVPFESD DGYDQQTNYG SGFLPFATSD  240
ETQNEEKADN SKSPISSTLC NSKSAYSSVC PTGRISFKLY DWNPAEFPRQ LRHQVFKWLS  300
SMPVELEGYI RPGCTILTIF IAMPEFMWEK LSQNAVSCIR YLVYAPDSLL IGRGNIHIYL  360
CNTIVQILED QTSLMSTRME VQVPRLHYVY PTFFEAGQPV EFIACGSNIN QPKFRFFVSF  420
AGKYLGLYQE EITPCKVNDM DSLCHCEHQM FRINIPQTDS DIFGPAFIEV ENKLGISNFV  480
PILFGNKLIC SEFEKIYRKI CDDCCLDDIY RTTDADATSR SCKSFVSKQT GISALLLDFA  540
WVLRNPVLEK REELLSSTNI WRLMRLSKFL LQMESFNLLE VVLHYLDGIN LPSLKCNAND  600
TWDDDWCLFL NYMNQAREIL SQRRIYHMRL ELGSENSSCR SDFSQSDGDS DKKNNVLYGN  660
QDTGRRNKDG DKEEEEEEEE EHDATPVLMS ERGQIPNCHP KEGGLRGTSL TRKTAMHVAV  720
LVAVSAVVCF SACLALFHLN KVEDIALFLK RRFCCRLWSV GFQKYAVVCP QKKYQNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-3788166583squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149161RRKLEHHNKRRRR
2150162RKLEHHNKRRRRR
3157162KRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402789.10.0PREDICTED: squamosa promoter-binding-like protein 9 isoform X1
TrEMBLM0T2130.0M0T213_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P26880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-166squamosa promoter binding protein-like 7