PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P23900_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 565aa    MW: 62221.3 Da    PI: 7.2066
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P23900_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32245301259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers  +++++ei+Y+g+Hnh+
  GSMUA_Achr5P23900_001 245 KDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSL-EGHITEIIYKGTHNHP 301
                            8****************************************.***************8 PP
2WRKY105.23.4e-33430488159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+d k v++tYeg+Hnh+
  GSMUA_Achr5P23900_001 430 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCNVRKHVERAAHDLKSVITTYEGKHNHD 488
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.814239303IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.5E-29242303IPR003657WRKY domain
SuperFamilySSF1182905.49E-26243303IPR003657WRKY domain
SMARTSM007742.3E-35244302IPR003657WRKY domain
PfamPF031061.3E-24245301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-37415490IPR003657WRKY domain
SuperFamilySSF1182903.4E-29422490IPR003657WRKY domain
PROSITE profilePS5081137.711425490IPR003657WRKY domain
SMARTSM007741.3E-38430489IPR003657WRKY domain
PfamPF031062.6E-25431488IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MISDRSQFHI VKSNWSGAHK LNSHGGLAER ISASGFNVPK LNTARIGQEK MASSSSDVRS  60
PYLTIPPGLS PTSLLESPVF LSNSMAQPSP TTGKLHFAQN NIAGPASMSV SSSRIKSNDL  120
LEDAPEAFAF KPLLELHSSF YSSSERMVAP GLSQPQTLSS ITVPVQLGKP KETGTLEAGP  180
MHSQNQHEFN LQADSKDATD SIMFKHSMPD SFMGSDHALP LDDEQDGDRD LKGEPSSVAV  240
GAPAKDGYNW RKYGQKQVKG SEYPRSYYKC THPNCQVKKK VERSLEGHIT EIIYKGTHNH  300
PMPPPNRRSG VLLSHPFNDP EIDGSAQTGS QMNSDSKTMW TTRNMGNEEQ DWQARLSSDA  360
IDVSSTMSNE EDEDDRATHG SVSLGCDGEG DETESKRMKL DTTAIEMSAA SRAVREPRVV  420
VQTTSEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTHPG CNVRKHVERA AHDLKSVITT  480
YEGKHNHDVP AARNSNHPGS IPSGTISNTA APHEPHGLLP RVESAQGGLF LYNSFNYIIV  540
RHMLYLNRVH INFKLLHAVY FNLSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-38246491878Probable WRKY transcription factor 4
2lex_A2e-38246491878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9572161e-52FJ957216.1 Allagoptera arenaria voucher IPA:Noblick 5168 WRKY transcription factor 12 (WRKY12) gene, exons 1, 2 and partial cds.
GenBankFJ9572171e-52FJ957217.1 Allagoptera arenaria voucher NA:Meerow 3200 WRKY transcription factor 12 (WRKY12) gene, exons 1, 2 and partial cds.
GenBankFJ9572181e-52FJ957218.1 Allagoptera leucocalyx voucher FTG:Zardini 54930 WRKY transcription factor 12 (WRKY12) gene, exons 1, 2 and partial cds.
GenBankFJ9572551e-52FJ957255.1 Lytocaryum weddellianum voucher NA:Meerow 3207 (photo only) WRKY transcription factor 12 (WRKY12) gene, exons 1, 2 and partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401331.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG771e-145WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLM0T1650.0M0T165_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P23900_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-147WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]