PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P23700_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 27765.6 Da PI: 7.7282 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.2 | 3.4e-09 | 154 | 202 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN++++ L+ l+P + +k + a++L + ++Y++sLq GSMUA_Achr5P23700_001 154 NSHSLAERARREKINERMSCLQGLVPGC----HKAMGIAAMLDEIINYVQSLQ 202 58*************************9....788*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.98E-10 | 149 | 206 | No hit | No description |
SuperFamily | SSF47459 | 6.54E-17 | 149 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.173 | 151 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-17 | 152 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 154 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-10 | 157 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MLDLSCWALS PRKPSHISFI YIACERDDEL PAFSFHLKPS ISCSYGGLLC QFPELNDTAM 60 DHPSSGLMCY SDENSSSHQT DELLTAIVGN LTSLLPATAA SAISFASNNS ALSGTATKSA 120 EANPKKKKKK KKKKNEDMPK EVVHVRARRG QATNSHSLAE RARREKINER MSCLQGLVPG 180 CHKAMGIAAM LDEIINYVQS LQNQVQMLSM KLAVCESSLE RMQAAATLQE EPNSRFAQDE 240 VGGGCGAAFV SPNHF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 133 | KKKKKKKKKK |
2 | 125 | 133 | KKKKKKKKK |
3 | 127 | 133 | KKKKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009401352.2 | 1e-140 | PREDICTED: transcription factor bHLH75-like | ||||
TrEMBL | M0T145 | 0.0 | M0T145_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P23700_001 | 0.0 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18400.1 | 3e-38 | BR enhanced expression 1 |