PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr5P23610_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 194aa MW: 21123 Da PI: 6.5004 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 165.1 | 5.2e-51 | 9 | 158 | 5 | 167 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 + +eq+ yvqC+fC til+vsvP +sl+kvvtvrCGhCt llsv+l +s ++++e +l +e++++e +l + ++ GSMUA_Achr5P23610_001 9 ELPEQLGYVQCSFCATILLVSVPCSSLLKVVTVRCGHCTGLLSVSLVRTS-VVPVEL------LASLGDEEGKQE-DLG----PKACS 84 689****************************************9987654.334432......223333333322.222....22333 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 s + + ene+++ +r+p +++PPekrqr+Psayn fi+eei rika P+i+h+eafsaaaknWahfP+i GSMUA_Achr5P23610_001 85 SGGGGVGE-AENETRSPTRAPIINKPPEKRQRAPSAYNHFIREEIVRIKAREPNITHKEAFSAAAKNWAHFPRIQ 158 33333333.6788999999999***************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.3E-57 | 11 | 159 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.71E-7 | 100 | 155 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.7E-4 | 108 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence Send to blast |
MSSSNPLLEL PEQLGYVQCS FCATILLVSV PCSSLLKVVT VRCGHCTGLL SVSLVRTSVV 60 PVELLASLGD EEGKQEDLGP KACSSGGGGV GEAENETRSP TRAPIINKPP EKRQRAPSAY 120 NHFIREEIVR IKAREPNITH KEAFSAAAKN WAHFPRIQHN EDGKSCSSRE GKKICDGHVD 180 EEFAFFPSTM MIDD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018681249.1 | 1e-132 | PREDICTED: protein YABBY 7-like | ||||
Swissprot | Q9LDT3 | 4e-48 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | M0T136 | 1e-141 | M0T136_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P23610_001 | 1e-142 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13625 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-43 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|