PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P22190_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

ERF

Protein Properties

Length: 188aa MW: 20791.3 Da PI: 10.7378

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P22190_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51	3.6e-16	41	90	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+WvAe+r+p +kr r++lg++ ta Aa+a++ a l+g GSMUA_Achr5P22190_001 41 PYRGVRMRK-WGKWVAEVREP---NKRSRIWLGSYSTAVAAARAYDTAVYHLRG 90 59***99.***9998...337*******************999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.3E-30	41	99	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-33	41	104	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.655	41	98	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.32E-21	42	100	IPR016177	DNA-binding domain
PRINTS	PR00367	3.9E-12	42	53	IPR001471	AP2/ERF domain
Pfam	PF00847	8.3E-10	42	90	IPR001471	AP2/ERF domain
CDD	cd00018	1.64E-26	42	99	No hit	No description
PRINTS	PR00367	3.9E-12	80	100	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MEGQYCFTST NDKPRKPSPP AAGKRAAAAV GSAGGGGKDR PYRGVRMRKW GKWVAEVREP 60 NKRSRIWLGS YSTAVAAARA YDTAVYHLRG RSARLNFPDE ILSDDPVVGG APMSAALIRK 120 KATEVGARVD ALWMGLMSPT PPQQQQQQPH REHHQHRLQF QQQQQQPTRA AKNPDLNQQP 180 SPESSDVD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	9e-17	31	100	4	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009401521.1	1e-137	PREDICTED: ethylene-responsive transcription factor ERF011-like
Swissprot	Q9FH94	6e-43	ERF10_ARATH; Ethylene-responsive transcription factor ERF010
Swissprot	Q9SNE1	2e-43	ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBL	M0T0P4	1e-136	M0T0P4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P22190_001	1e-137	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3943	30	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46768.1	3e-33	related to AP2 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Shen PC,Hour AL,Liu LD Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis. Bot Stud, 2017. 58(1): p. 22 [PMID:28510204]