PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr5P20930_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 219aa MW: 23452.4 Da PI: 8.8745 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.3 | 1.8e-17 | 123 | 157 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gp g+ktLCnaCG++y++ +l GSMUA_Achr5P20930_001 123 CMHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 157 99*****************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.1E-15 | 117 | 167 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.147 | 121 | 153 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.1E-13 | 121 | 155 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 2.57E-14 | 121 | 181 | No hit | No description |
CDD | cd00202 | 1.27E-12 | 122 | 167 | No hit | No description |
Pfam | PF00320 | 2.9E-15 | 123 | 157 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 123 | 148 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MRTPASSYSA SLVTVAPQQD AAAPAYPYGL PPAVDALRVT DVLDFSGRDL FPSAFGADTQ 60 FFTVGGTAET DSSFDLYVPV STSTKNTQST SFCSLSLCLD FNGGSRGKKS GWGVGAEGGV 120 RRCMHCASEK TPQWRTGPLG PKTLCNACGV RYKSGRLLPE YRPAASPAFV LTQHSNSHRK 180 VMEIRRQKEL LLRHHKNQPP ASAAAAANRP ELLDGNDVC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC069300 | 2e-65 | AC069300.7 Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence. | |||
GenBank | AK242292 | 2e-65 | AK242292.1 Oryza sativa Japonica Group cDNA, clone: J075191F19, full insert sequence. | |||
GenBank | AP014966 | 2e-65 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 2e-65 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. | |||
GenBank | CT837819 | 2e-65 | CT837819.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN064N24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009402051.2 | 4e-67 | PREDICTED: GATA transcription factor 2-like | ||||
TrEMBL | M0T0C2 | 1e-161 | M0T0C2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P20930_001 | 1e-162 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4621 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45050.1 | 9e-46 | GATA transcription factor 2 |