PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P20170_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRF
Protein Properties Length: 171aa    MW: 18447.4 Da    PI: 9.8592
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P20170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC84.11.2e-2690134145
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                            ++epgrCrRtDGKkWRCsr+v++++k+CErH+hrgr+rsrk++e+
  GSMUA_Achr5P20170_001  90 EPEPGRCRRTDGKKWRCSRDVVPDQKYCERHMHRGRNRSRKPVEA 134
                            69****************************************985 PP
2QLQ58.12.6e-202760437
                    QLQ  4 TaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                           T +Qlq+L++Q+l+yKy+aa++PvP +L+++i+k
  GSMUA_Achr5P20170_001 27 TFMQLQELEHQALIYKYMAAGLPVPVHLVLPIWK 60
                           789******************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.9E-72460IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.4812560IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.4E-142759IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.49990134IPR014977WRC domain
PfamPF088795.2E-2391133IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MAAPSPLMLG LGLGLGTGPG ASKPVITFMQ LQELEHQALI YKYMAAGLPV PVHLVLPIWK  60
SVAASSFGAY HYPSLMGYGS LCLDYRNSME PEPGRCRRTD GKKWRCSRDV VPDQKYCERH  120
MHRGRNRSRK PVEAAATSAA AASTPPSCPS RSRLVGGFCR PPTPPAAAAE P
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402070.11e-123PREDICTED: growth-regulating factor 10-like
SwissprotQ6EPP92e-63GRF10_ORYSJ; Growth-regulating factor 10
TrEMBLM0T0461e-122M0T046_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P20170_0011e-122(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.13e-38growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]