PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P17240_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Trihelix | ||||||||
Protein Properties | Length: 218aa MW: 24772.6 Da PI: 9.6848 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 84.4 | 1.5e-26 | 77 | 158 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rre++ ++++k++ +lWe++s kmre+gf rsp++C++kw+nl k++kk k++ k+ s+s+ +++y+++l+ GSMUA_Achr5P17240_001 77 WIQEETKSLIALRREIDGLFNTSKSNRHLWEQISTKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQIKG--SGSV-KMSYYKELD 158 *****************************************************************9998..4555.89*****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-5 | 68 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.525 | 69 | 133 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0075 | 73 | 135 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.49E-5 | 74 | 141 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 6.69E-28 | 75 | 140 | No hit | No description |
Pfam | PF13837 | 8.7E-22 | 76 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MSLLTLDQFL SRSLHSRANI IGEDAAVATA RRMYSTEKPC GVDFYNGGLP PPPQMILAES 60 SGEDHEVRAP KKRAETWIQE ETKSLIALRR EIDGLFNTSK SNRHLWEQIS TKMREKGFDR 120 SPTMCTDKWR NLLKEFKKAK HQIKGSGSVK MSYYKELDEL LKERSKKAGF KSSAASKVDA 180 YLHFPDKGLE DANIPLGPVE GIKKLYSCAI FFCMVIFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 5e-49 | 71 | 156 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009401153.1 | 1e-144 | PREDICTED: trihelix transcription factor GT-1-like isoform X1 | ||||
Refseq | XP_009401154.1 | 1e-145 | PREDICTED: trihelix transcription factor GT-1-like isoform X2 | ||||
Swissprot | Q9FX53 | 5e-70 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | M0SZA3 | 1e-162 | M0SZA3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P17240_001 | 1e-162 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5631 | 37 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.3 | 1e-70 | Trihelix family protein |
Publications ? help Back to Top | |||
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