PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P16630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 365aa    MW: 40677 Da    PI: 7.7822
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P16630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.21.3e-1175106233
                            XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLee 33 
                            + +k+ rr+++NReAAr+sR+RKka++++Le 
  GSMUA_Achr5P16630_001  75 PTDKVLRRLAQNREAARKSRLRKKAYVQQLES 106
                            5789**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.0E-869120No hitNo description
SMARTSM003384.2E-674137IPR004827Basic-leucine zipper domain
PfamPF001702.8E-876111IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.86476118IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.44E-779120No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
PfamPF141449.8E-32165239IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSSASTQFAS PRKMGIFEPN HQIGMWGDSF KADSSQNTGA SSIVEAEIKL DNRLEDSPHT  60
MLGPSKKYDQ EANKPTDKVL RRLAQNREAA RKSRLRKKAY VQQLESSRLK LAQIEQQLDQ  120
AKQQGVYIGG NLGESTLGLS GSVNSGVTAF EMEYGHWVEE QNRQTSELRA ALQAHVSDIE  180
LRMLVESALS HYDNLFHIKA IAAKSDVFYL MSGMWKTAAE RFFLWIGGFR PSELLKVLSP  240
QLDPLTEQQV ISVCNLQQSS QQAEDALSQG MDKLQQNLAE TLTSDSSGTS GVSDYMGQMV  300
NAMGKLEALV SFVNQADHLR QQTLQQMYKI LTVRQAARGL LALGDYFQRL RALSSLWAAR  360
PREPA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5825550.0KF582555.1 Musa acuminata AAA Group cultivar Cavendish transcription factor tga1 (TGA4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401075.10.0PREDICTED: transcription factor TGA4 isoform X1
RefseqXP_009401076.10.0PREDICTED: transcription factor TGA1 isoform X2
RefseqXP_018681982.10.0PREDICTED: transcription factor TGA1 isoform X2
SwissprotQ392371e-170TGA1_ARATH; Transcription factor TGA1
TrEMBLM0SZ420.0M0SZ42_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P16630_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35713877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-170bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]