PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P15300_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 356aa MW: 39067.3 Da PI: 8.9068 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.6 | 5.9e-13 | 111 | 157 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE+ ++ + ++lG+g+W+ I+r Rt+ q+ s+ qky GSMUA_Achr5P15300_001 111 RTPWTEEEHRMFLLGLQKLGKGDWRGISRNYVVSRTPTQVASHAQKY 157 789*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.272 | 106 | 162 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-16 | 109 | 163 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-10 | 110 | 160 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-10 | 111 | 157 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.1E-18 | 111 | 161 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.2E-11 | 111 | 157 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.60E-9 | 113 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MTRRCSHCSH NGHNSRTCPN RGVKLFGVRL TDGSVRKSAS MGNLSLLAGS SGGASPEPGG 60 GAAADGYASE DFVKGSSSSC RERKKGMEMN QELCILQVIR NNEEEKKKAM RTPWTEEEHR 120 MFLLGLQKLG KGDWRGISRN YVVSRTPTQV ASHAQKYFIR KANMTRRKRR SSLFDMVPDE 180 VSLSLSLSLS LSPSFACLVT IIRRCSTLPL SLIYQLLTAN NLLYFNNLPL IPPTLNEECE 240 SMDSNDSMTG EAGAPQPEAP QCSYPVILPA YYSPFLQFSY PYWSGYKADA SEQQTHEIIK 300 PTAVHSKNPI NVDELVGMSK LSIGESGGET TSSLDLLGGS RRQSAFHANP STKAQA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP092734 | 1e-42 | FP092734.1 Phyllostachys edulis cDNA clone: bphylf029c02, full insert sequence. | |||
GenBank | FP096505 | 1e-42 | FP096505.1 Phyllostachys edulis cDNA clone: bphylf058m17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009400892.1 | 0.0 | PREDICTED: uncharacterized protein LOC103985010 | ||||
Refseq | XP_009400893.1 | 0.0 | PREDICTED: uncharacterized protein LOC103985010 | ||||
Swissprot | Q7XC57 | 1e-138 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | M0SYQ9 | 0.0 | M0SYQ9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P15300_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1939 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 1e-100 | MYB_related family protein |
Publications ? help Back to Top | |||
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