PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P13410_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 268aa    MW: 28495.8 Da    PI: 6.7754
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P13410_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15e-18174208135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  GSMUA_Achr5P13410_001 174 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 208
                            *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.66E-14167230No hitNo description
SMARTSM004018.7E-16168218IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.754168204IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-13172206IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.08E-14173220No hitNo description
PfamPF003207.2E-16174208IPR000679Zinc finger, GATA-type
PROSITE patternPS003440174199IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAMMGIGACY SISSAAVAPL PSTSAAPTSP AYLYGPVPPT ADAGLCVDDL LDFSHHDLFP  60
PVATDTLFYA TTTVEPSLTT GGSTLSEETF SVFRSQQASS DLYIPHCEDA AELEWLSKFV  120
EDSFSDRSSA AAGAVAAEAW GNGGDNINRS NRGKKGVSGG GRSAGMEGGA ARRCTHCASE  180
KTPQWRTGPL GPKTLCNACG VRYKSGRLVA EYRPAASPTF VLTQHSNSHR KVMELRRQKE  240
QLLRRHHQEN HPSSSAQPEL LLGDYGAC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3580346e-75AK358034.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1067G03.
GenBankAK3658416e-75AK365841.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038D02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400683.10.0PREDICTED: GATA transcription factor 4-like
SwissprotO497434e-53GATA4_ARATH; GATA transcription factor 4
TrEMBLM0SY700.0M0SY70_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P13410_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-37GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]