PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P09940_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 26625.7 Da PI: 11.0474 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.9 | 3.8e-21 | 86 | 136 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GVr ++ +gr++AeIrd ++ ++r +lg+f+taeeAa+a+++a+++l+g GSMUA_Achr5P09940_001 86 SHFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDEAARSLRG 136 78********.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.76E-28 | 86 | 146 | No hit | No description |
Pfam | PF00847 | 1.1E-13 | 86 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-22 | 86 | 145 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.3E-36 | 87 | 150 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-31 | 87 | 145 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.247 | 87 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 88 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 110 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MRLPSGKRNQ WYYIKSRSGG CWVRPRPPVA VYIYITFPFA PSRTKPRYVL VMAVETIPTR 60 NAGSATVAVT GSKEAALTMG GGRKASHFRG VRKRPWGRFA AEIRDPWKKT RKWLGTFDTA 120 EEAARAYDEA ARSLRGPKAK TNFGNSVPVV EILPSAAASA VPAPQISWSL APPWRSGFLA 180 LAPAPNGQDM FLGWQSNQSK YSWYRFEAVK MVVSEQEEAK KKKKKSFDFD LNLPPPFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-19 | 84 | 143 | 2 | 62 | ATERF1 |
3gcc_A | 5e-19 | 84 | 143 | 2 | 62 | ATERF1 |
5wx9_A | 1e-18 | 80 | 143 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009400503.2 | 1e-132 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | M0SX73 | 1e-172 | M0SX73_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P09940_001 | 1e-173 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 5e-23 | erf domain protein 9 |