PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr5P09240_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 243aa MW: 26114 Da PI: 9.5648 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.1 | 4.2e-13 | 82 | 126 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky GSMUA_Achr5P09240_001 82 PWTEEEHRSFLIGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 126 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.565 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 17.409 | 75 | 131 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.41E-18 | 76 | 132 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-18 | 78 | 130 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.3E-11 | 79 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-9 | 79 | 129 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.09E-8 | 82 | 127 | No hit | No description |
Pfam | PF00249 | 1.3E-10 | 82 | 126 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MVRKCSHCGH NGHNSRTCIN TRSSMVGGGG CLSYTYPAAS SSSPSSSSSS LGSIDEATQK 60 ISHGYLSDGL GGRTQERKKG VPWTEEEHRS FLIGLEKLGK GDWRGISRNF VTTRTPTQVA 120 SHAQKYFLRQ NSLNKKKRRS SLFDVVANCE GAAHNTASSK SDDASFSSEL HAPTLSLTMA 180 GHKASETTTI DLNSSGQEQV IQMPSSQSPS SMERTRAQLS NLDLELRISS SPGSLCLGTI 240 RVT |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 134 | 138 | KKKRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00565 | DAP | Transfer from AT5G56840 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009400577.1 | 1e-154 | PREDICTED: transcription factor MYB1R1 | ||||
Swissprot | Q7XC57 | 3e-51 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | M0SX03 | 1e-178 | M0SX03_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P09240_001 | 1e-179 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4231 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47390.1 | 1e-49 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|