PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P07290_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 274aa MW: 29720.8 Da PI: 6.4983

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P07290_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.5e-39	31	91	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+a++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rkn++ s GSMUA_Achr5P07290_001 31 PEQAVECPRCQSTNTKFCYYNNYSLSQPRYFCKGCRRYWTRGGSLRNVPVGGGCRKNRRPS 91 7899*****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.0E-33	33	89	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-24	34	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MGDLLPLEEV GSGSSTAQQL QQQERRGRPQ PEQAVECPRC QSTNTKFCYY NNYSLSQPRY 60 FCKGCRRYWT RGGSLRNVPV GGGCRKNRRP SSSLSSSSSS TATTLASKRR SQQSLATNFN 120 LPLPGVIPPP HSFDPDGLSS PFARIHNQQH TPRQLLDDHG AFLLGNPAAP EILNAIATPN 180 SFGNIYYGYG SNASIEEEAA IPRDGGLCGA TTTAATTVTT AQASCSTMDE GGNEVFTGLQ 240 WQLPGDGNMD HMDFGRDHQW NEVGSTWPGE MVDI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009399889.2	1e-153	PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBL	M0SWF8	0.0	M0SWF8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P07290_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4704	32	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	1e-32	Dof family protein