PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P07040_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 258aa MW: 28972.2 Da PI: 6.7861

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P07040_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00018	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H GSMUA_Achr5P07040_001 60 YSCSFCRREFRSAQALGGHMNVH 82 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.53E-6	57	86	No hit	No description
PROSITE profile	PS50157	11.219	60	87	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0098	60	82	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEQARCWMWT RTRHSGRPHL SAQIPGVVLG SSSNESWEER AFAEDAAGRL GGCTWPPRSY 60 SCSFCRREFR SAQALGGHMN VHRRDRARLK QLSSSLGEET AEAEDEQVTG AELRPQVSPN 120 PSSRFLPPPL SPRVSAPSIQ ENWPDNTLIS PPFSSSIARE DPNESLFSTT RSLHHPTLLH 180 LLIVPESKLG ETNLGSNGFG FRSRRDPGIY DEQTSCYKRS RTERPSSCEQ QQVQSEVPDH 240 NHLEELDLEL RLGSIPKM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	1e-12	55	82	2	29	superman protein
2l1o_A	1e-12	55	82	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400140.1	0.0	PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBL	M0SWD3	0.0	M0SWD3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P07040_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9594	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	3e-26	zinc-finger protein 10