PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P05300_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 206aa MW: 23588.7 Da PI: 7.2727 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.5 | 1.5e-20 | 72 | 126 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t+eq++ Le+ Fe ++++ e++ eLA+klg++ rqV vWFqNrRa++k+ GSMUA_Achr5P05300_001 72 KKRRLTPEQVHLLERSFEAENKLEPERKGELARKLGMQPRQVAVWFQNRRARWKN 126 5678*************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 129.9 | 1e-41 | 71 | 160 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrl+ eqv+lLE+sFe+e+kLeperK elar+Lg+qprqvavWFqnrRAR+k+kqlE+d+++Lk++y++l +++++L +e+++Lr GSMUA_Achr5P05300_001 71 EKKRRLTPEQVHLLERSFEAENKLEPERKGELARKLGMQPRQVAVWFQNRRARWKNKQLEHDFDRLKSSYNTLLADHDSLLRENDRLR 158 69*************************************************************************************9 PP HD-ZIP_I/II 89 ee 90 ++ GSMUA_Achr5P05300_001 159 SQ 160 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.556 | 67 | 127 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-20 | 70 | 131 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.21E-19 | 72 | 138 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.73E-17 | 72 | 128 | No hit | No description |
Pfam | PF00046 | 8.6E-18 | 72 | 126 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-22 | 73 | 134 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.7E-6 | 98 | 107 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 102 | 125 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.7E-6 | 107 | 123 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.2E-14 | 127 | 164 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MDSGRLIFHS SLSHGHHGQQ MILLGGGGPV FGGGFLPVSA VEGASKRRPF FTSPDELLEE 60 EYYYYDEQLP EKKRRLTPEQ VHLLERSFEA ENKLEPERKG ELARKLGMQP RQVAVWFQNR 120 RARWKNKQLE HDFDRLKSSY NTLLADHDSL LRENDRLRSQ AYTLSLSPLD SKITPPSSSI 180 VFDEMVGVGA IGEWPPSCCY VRLHYG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 127 | RRARWKNKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399661.1 | 1e-89 | PREDICTED: homeobox-leucine zipper protein HOX16-like | ||||
Swissprot | Q02283 | 1e-57 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | M0SVV9 | 1e-151 | M0SVV9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P05300_001 | 1e-152 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2609 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 7e-52 | homeobox 1 |
Publications ? help Back to Top | |||
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