PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P04150_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 633aa    MW: 68601.2 Da    PI: 6.4413
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P04150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.1e-31267324260
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                            +DgynWrKYGqK+vkg e+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
  GSMUA_Achr5P04150_001 267 EDGYNWRKYGQKQVKGCEYPRSYYKCTQPNCQVKKKVERSH-EGHITEIIYKGAHNHPK 324
                            8****************************************.***************85 PP
2WRKY102.62.2e-32425483159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC v+k++er+++d k v++tYeg+Hnh+
  GSMUA_Achr5P04150_001 425 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCIVRKHIERASHDLKSVITTYEGKHNHD 483
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.124261325IPR003657WRKY domain
SuperFamilySSF1182901.96E-24264325IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-27264325IPR003657WRKY domain
SMARTSM007746.3E-34266324IPR003657WRKY domain
PfamPF031061.4E-23267323IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-36410485IPR003657WRKY domain
SuperFamilySSF1182903.66E-28417485IPR003657WRKY domain
PROSITE profilePS5081137.929420485IPR003657WRKY domain
SMARTSM007742.5E-36425484IPR003657WRKY domain
PfamPF031063.8E-24426483IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MAGTDDDSSV IEFWSPSNRS SRTLPPSLSN EAFGSSSFSD FLAENGNGNV GPLWKSETQR  60
MGTNTNIEGN EAGVSDSNGF SLQPRLFGSS TPGGLAERMA TRKGFQVPKL DTACIPPAGM  120
ASQSDVGLPY LTIPPGLSPT MLLESPVFLS DPMVQLFSTT GKFKSAEDDA SNSMLVSNSA  180
ASTKSEDYLF EDNLEAFAFK PPPESHSHLS TSGKKPQELP GMEVSTQPEK PTQAGMASHH  240
SPAVDDQHDG EGDLRGELSA AAGTPAEDGY NWRKYGQKQV KGCEYPRSYY KCTQPNCQVK  300
KKVERSHEGH ITEIIYKGAH NHPKPHLNRR PGSSQSGNGG QDWLNQDGTR LSSDVIGVSS  360
TMSNDEEDDD RATHGSVSLG CDGEGDETES KRRKIDACAI EMSAASRAVR EPRVVVQTTS  420
EVDILDDGYR WRKYGQKVVK GNPNPRSYYK CTNPGCIVRK HIERASHDLK SVITTYEGKH  480
NHDVPVARSS SHPNSAPSSN PNSDPQPHSL LQRSEPTQDN FVRFDGHAPL GTFRFPGREQ  540
LGPATSCFPF ALGQPGLTNL AMAGLGPMAA MKMPVIPPVH PYLGRHHPAE AGYMMHKIEP  600
KEESAPDSVL PVPPNATSVY HQMMSRLPLG PHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36267485877Probable WRKY transcription factor 4
2lex_A2e-36267485877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399513.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG771e-142WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLM0SVJ40.0M0SVJ4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P04150_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-137WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]