PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P03440_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 269aa    MW: 28889.9 Da    PI: 6.5045
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P03440_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.7e-0878102126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +kt+lC+ f++ GtC+y  +C+FaHg
  GSMUA_Achr5P03440_001  78 FKTKLCCKFRA-GTCPYITNCNFAHG 102
                            69*********.*************8 PP
2zf-CCCH43.93.9e-14149174126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +kt++C+ +  tG+C++G++C+FaHg
  GSMUA_Achr5P03440_001 149 WKTRICNKWEMTGYCPFGSKCHFAHG 174
                            8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.0E-1475110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-875108IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.95377104IPR000571Zinc finger, CCCH-type
SMARTSM003560.003777103IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-578102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-17144178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-10145179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422148176IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9148175IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-11149174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDYGGGTSYP GSNAIAIIPD ASGPPGRDSW LPGGSDQLLW ATDEDYRAWS GDASADAGFN  60
SAYDGRQSHS KAIGKMFFKT KLCCKFRAGT CPYITNCNFA HGIEELRKPP PNWQEIVAAH  120
EEGSEAREEL GGSGYGGGAN GSTQKPSNWK TRICNKWEMT GYCPFGSKCH FAHGAAELHR  180
YGGGLMETEG RDVSSATPDS KQAGTLTKAP SDASVASSIS VPHADMYHIG VPSQRSAGSL  240
QRQGQRSVEK WKGPDKISKI YGDWIDDIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682265.11e-170PREDICTED: zinc finger CCCH domain-containing protein 56
TrEMBLM0SVC30.0M0SVC3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P03440_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.12e-67C3H family protein