PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr5P02170_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 307aa MW: 34801.9 Da PI: 6.7048 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.2 | 2e-50 | 22 | 149 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 pGfrFhPtdeelv +yL++kve+k+l++ e+ikevdiyk++PwdLp +++a+e+ewyfF+ r +ky+++ r+nr+t sg+Wkatg d GSMUA_Achr5P02170_001 22 LPGFRFHPTDEELVGFYLRRKVEKKPLSV-EIIKEVDIYKYDPWDLP-TITAGENEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGID 107 69***************************.89***************.778899********************************** PP NAM 90 kevlskkgel...vglkktLvfykgrapkgektdWvmheyrl 128 ++++ + g++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl GSMUA_Achr5P02170_001 108 RPIHPAAGHAaacIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 149 ****984444455***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-53 | 18 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.463 | 21 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-25 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 307 aa Download sequence Send to blast |
MEKKGEQEAV AVGEQKEEDV VLPGFRFHPT DEELVGFYLR RKVEKKPLSV EIIKEVDIYK 60 YDPWDLPTIT AGENEWYFFC LRGRKYRNSI RPNRVTGSGF WKATGIDRPI HPAAGHAAAC 120 IGLKKSLVYY RGSAGKGTKT DWMMHEFRLP AGGSGKITTT PSMHEAEIWT ICRIFKRSPI 180 SYRKQTNSWR EASTSSSTRK QIAADSSCVT SSFECDNGND YRCCASSGHS NGEQGEMELA 240 THYYQENNQV SGGQWNPIHQ PPLLYTNAGQ SPTMDECFRS DGDWDELGRI VEFMRDQTLL 300 PYDCGYT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-47 | 12 | 178 | 1 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399061.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1 isoform X1 | ||||
Refseq | XP_009399062.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1 isoform X2 | ||||
Swissprot | Q9SK55 | 5e-80 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | M0SUZ6 | 0.0 | M0SUZ6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P02170_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-82 | NAC domain containing protein 42 |