PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P02140_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Trihelix

Protein Properties

Length: 312aa MW: 35290.1 Da PI: 9.2825

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P02140_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.7	9.5e-16	23	103	2	72
trihelix 2 WtkqevlaLiearr..........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt +e+++Li+a++ + r ++g+ ++ +W++v ++++ rg+ rs++qC+++w+nl ++y k+++ e + + GSMUA_Achr5P02140_001 23 WTLDETMVLIQAKKmdcerreqrlKELPRGSSGRPQEMRWKWVEDRCWGRGCYRSQNQCNDRWDNLMRDYNKVRAYETSSS 103 ***********97776444322222233346799************************************9998754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.34	15	89	IPR017877	Myb-like domain
Pfam	PF13837	1.3E-13	22	102	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEKNVFVVVG RGDKSREYRK GNWTLDETMV LIQAKKMDCE RREQRLKELP RGSSGRPQEM 60 RWKWVEDRCW GRGCYRSQNQ CNDRWDNLMR DYNKVRAYET SSSVGGNPDL SYWNLEKNDR 120 KERNLPSNVL PEVYEALTEV VQRKRSGAAS APPGRPMEEK RRRGPVCSSL SSAANAFSNL 180 PAWSYCDLSS FTLLLVCILA CCDSSDSEDS QHPISPQRKR KRGEGSSSNT LELSSAIMKC 240 ASIMAEALQA GEKQEEVRHK DLISIERRKA KLEESKSVMG LQSMDGLAAA INMLASSILG 300 LVTGRVQKLQ NK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	162	RKRSGAASAPPGRPMEEKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009399286.1	0.0	PREDICTED: trihelix transcription factor ASR3-like
TrEMBL	M0SUZ3	0.0	M0SUZ3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P02140_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3294	35	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-51	Trihelix family protein