PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P01010_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Dof
Protein Properties Length: 259aa    MW: 28758.8 Da    PI: 4.6879
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P01010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.37e-382985662
                 zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                            +cprC+s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++++
  GSMUA_Achr5P01010_001 29 PNCPRCHSSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRAK 85
                           58***************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-291383IPR003851Zinc finger, Dof-type
PfamPF027012.8E-322983IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7142983IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MLSSNDNVLS YAPPVVADRR WKPIVELAPN CPRCHSSNTK FCYYNNYSLS QPRYFCKGCR  60
RYWTKGGSLR NVPVGGGCRK SRRAKSTKPD SCMTRAATID DSTAPADGSS IDLQALYAKY  120
SNQRPQTEIG PATAESQLEE GDHEPVGSVG TSSESSSCNQ VFSQPMEEEE EEEAIALLRQ  180
VDPPYNIEHS RLPLDLTGPV EWPMQPVTNY VSLDCPSGSG LNYEEFESVA VGGMHHQQSP  240
LTDDWSLLDY SSFDAFYRC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN3937194e-57JN393719.1 Sorghum bicolor clone Sbdof25 Dof (Dof) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399310.21e-179PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBLM0SUN00.0M0SUN0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P01010_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.13e-43Dof family protein