PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P00310_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | G2-like | ||||||||
Protein Properties | Length: 90aa MW: 10219.9 Da PI: 10.6267 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.5 | 7e-29 | 18 | 67 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt++LH+rF++av++LGG++kAtPk+il+lm+vkgL ++hvkSHLQ GSMUA_Achr5P00310_001 18 PRIRWTEDLHRRFIQAVASLGGENKATPKQILRLMSVKGLGMSHVKSHLQ 67 8************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.237 | 14 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 14 | 67 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.49E-14 | 16 | 69 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.6E-24 | 18 | 68 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-6 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MTCFGRSGAR QYNRSETPRI RWTEDLHRRF IQAVASLGGE NKATPKQILR LMSVKGLGMS 60 HVKSHLQVCL YTFAAEIMSL LLSAYSFGLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-16 | 19 | 67 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-16 | 19 | 67 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-16 | 19 | 67 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-16 | 19 | 67 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399320.1 | 6e-43 | PREDICTED: uncharacterized protein LOC103983772 | ||||
Swissprot | Q700D9 | 7e-20 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | M0SUG0 | 5e-61 | M0SUG0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P00310_001 | 9e-62 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5493 | 37 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 4e-23 | G2-like family protein |