PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P30820_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | GATA | ||||||||
Protein Properties | Length: 271aa MW: 29777.9 Da PI: 8.491 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.7 | 1.8e-19 | 146 | 179 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk + GSMUA_Achr4P30820_001 146 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 179 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.61E-13 | 140 | 181 | No hit | No description |
SMART | SM00401 | 8.3E-20 | 140 | 191 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.466 | 144 | 176 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.2E-15 | 144 | 179 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.57E-12 | 145 | 173 | No hit | No description |
Pfam | PF00320 | 3.5E-17 | 146 | 179 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 146 | 171 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MSPLDLNQVC VIPIEEGSHL PPYAIANPSS SFSCPHLFGV RHDERGGYCI GHHLHQPQQE 60 PEEEFQIAGS SVEYMTQRPA DPSDGITEEE EPARPGRWMS PKMCFVRKTM NSTHIVVSEP 120 RGNRLVSEFS TYYRSSSSPG GIIRVCSDCN TTKTPLWRSG PRGPKSLCNA CGIRQRKARR 180 AMAAAALNGG LVPADAPSQV QKEKELDVDR TLPFKKRCKV DTASSMTATK LCFGEAKLSS 240 NRSSAIKKVF PQEERDAAIL LMALSCGLIR S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009398824.2 | 0.0 | PREDICTED: putative GATA transcription factor 22 | ||||
TrEMBL | M0STJ4 | 0.0 | M0STJ4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P30820_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 1e-23 | cytokinin-responsive gata factor 1 |