PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P30340_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 257aa    MW: 27676 Da    PI: 6.7047
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P30340_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.7e-18160194135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  GSMUA_Achr4P30340_001 160 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 194
                            *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.2E-17154204IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.385158190IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-14158218No hitNo description
Gene3DG3DSA:3.30.50.109.2E-14158192IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.51E-14159206No hitNo description
PROSITE patternPS003440160185IPR000679Zinc finger, GATA-type
PfamPF003206.8E-16160194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGMEPSYTRS SAAVAPLITH ATTTMPAYLY GSLPPAANGN SLRENDLIAF SDHDLLPSAA  60
TDTHFYATTG ASSMAGSVPL LAQAFSNFQS QQSQFDLCMP QCEDAAELEW LSQFVEDSFS  120
DVPAAPGAIA GPNAAWSSLN SRGKKGGWGG VGVEGVVRRC THCASEKTPQ WRTGPLGPKT  180
LCNACGVRYK SGRLVPEYRP AASPTFVLTR HSNSHRKVME LRRQKELLLH RHQEIDSSDA  240
AAAAARPEQQ FDDYGIC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0693002e-71AC069300.7 Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence.
GenBankAK2422922e-71AK242292.1 Oryza sativa Japonica Group cDNA, clone: J075191F19, full insert sequence.
GenBankAP0149662e-71AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126182e-71CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankCT8378192e-71CT837819.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN064N24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397524.11e-160PREDICTED: GATA transcription factor 4-like
SwissprotO497437e-54GATA4_ARATH; GATA transcription factor 4
TrEMBLM0STE60.0M0STE6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P30340_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-50GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]