PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P27790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 279aa    MW: 31854.9 Da    PI: 6.4115
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P27790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.9e-11227275247
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                             +W   E+e l +av+++G g+Wk+I  + +   ++Rt+ ++k++w++ 
  GSMUA_Achr4P27790_001 227 RKWNSLEEETLRKAVARYGAGNWKLIKGCHPeifERRTEVDLKDKWRNM 275
                            69*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-12223277IPR009057Homeodomain-like
SuperFamilySSF466892.57E-13223277IPR009057Homeodomain-like
PROSITE profilePS5129412.324223279IPR017930Myb domain
SMARTSM007171.0E-5225278IPR001005SANT/Myb domain
PfamPF002497.8E-9226275IPR001005SANT/Myb domain
CDDcd116607.43E-16227277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEAAVVDPAL RAQLARRETK EAALVAVRVC LEEMEKEMGP TFLEAAADAI VSCDCETHRS  60
LVVLSDKLRA FRSIGLESVE RGVEIGHLPS KIDRARSTVE GGEGIKLNDR NIEKDQMRTD  120
QEQGYSVDKN SMSCELQEVS DHKSCDNNYD DVPQSGQMDP VPPDPKDKPS LMDRNATAHT  180
FEWDSIPTHY GKSPNMKKEM DYFSSMNSKS SSSLNETKEY VLRRRKRKWN SLEEETLRKA  240
VARYGAGNWK LIKGCHPEIF ERRTEVDLKD KWRNMTRHM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397771.10.0PREDICTED: uncharacterized protein LOC103982540 isoform X2
TrEMBLM0SSP10.0M0SSP1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P27790_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-11MYB_related family protein