PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P27350_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 300aa MW: 33763.6 Da PI: 4.4747 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.4e-17 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l+ +++++G g+W++ ++ g+ R++k+c++rw +yl GSMUA_Achr4P27350_001 17 KGSWSLEEDMRLIAYIEKHGHGNWRALPKLAGLLRCGKSCRLRWINYL 64 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.5e-17 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l GSMUA_Achr4P27350_001 70 RGNFTKEEEDAIIELHRLLGNK-WSKIASCLP-GRTDNEIKNMWNTHL 115 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-24 | 8 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.097 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.81E-31 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.15E-10 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 25.695 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-26 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-17 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 70 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.00E-12 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MGRRGRAPCC DKVGLNKGSW SLEEDMRLIA YIEKHGHGNW RALPKLAGLL RCGKSCRLRW 60 INYLRPDIKR GNFTKEEEDA IIELHRLLGN KWSKIASCLP GRTDNEIKNM WNTHLKKRLA 120 SRERKSLATQ KPEDSQSSSS SSASRSCSDH GESKSDEEGN EDPSLYFTDL SVEMIEAPIG 180 PDMDMWGVAE YDTHQEEAAV IVPEFLSMME GGDYSSLIVS TGEEAMEEEE EAKGEGKSSE 240 WVEYLEKELG LCGASEENDS INQESLMRDA AEQQMEMEEE DPVSSYFHKD LVSTCPFGSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-28 | 15 | 119 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009397824.1 | 0.0 | PREDICTED: myb-related protein Zm1-like | ||||
Swissprot | P20024 | 8e-80 | MYB1_MAIZE; Myb-related protein Zm1 | ||||
TrEMBL | M0SSJ7 | 0.0 | M0SSJ7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P27350_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56160.1 | 1e-66 | myb domain protein 72 |
Publications ? help Back to Top | |||
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