PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P27270_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 289aa    MW: 31333 Da    PI: 7.1237
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P27270_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13e-0896120126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +kt+lC+ f++ GtC+y  +C+FaHg
  GSMUA_Achr4P27270_001  96 FKTKLCCKFRA-GTCPYITNCNFAHG 120
                            69*********.*************8 PP
2zf-CCCH43.84.3e-14169194126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +kt++C+ +  tG+C++G++C+FaHg
  GSMUA_Achr4P27270_001 169 WKTRICNKWEMTGYCPFGSKCHFAHG 194
                            8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.4E-1590128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-893126IPR000571Zinc finger, CCCH-type
SMARTSM003560.003795121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.95395122IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-596120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-18163198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-10165199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422168196IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9168195IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-11169194IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRFLRYARP AVRTRAHPSV RSMDYGGGAA YPSCNAIAIV PDASGPPGRD SWPPAGIDQL  60
VWATDEDYRA WNGDPSADAG SNSAYDGRQA IGKMFFKTKL CCKFRAGTCP YITNCNFAHG  120
IEELRKPPPN WQEIVAAHEE GSELREELGG SSGGYGGGAN GSPQKPSNWK TRICNKWEMT  180
GYCPFGSKCH FAHGAAELHI YGGGLTENEV RDVSLATSDS KQAGTLTKAP MDTSVASSLP  240
GPLSDLYHMD VPSQRSAGVI QRQVQRSVEK WKGPDKISKI YGDWIDDIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397833.11e-154PREDICTED: zinc finger CCCH domain-containing protein 56-like
TrEMBLM0SSI90.0M0SSI9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P27270_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.14e-62C3H family protein