PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P27220_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | TCP | ||||||||
Protein Properties | Length: 220aa MW: 22119.2 Da PI: 8.7119 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 79.9 | 6.9e-25 | 1 | 93 | 24 | 122 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksqksaasalnla 111 ++a caar+F+L++eLG+++d++ti WLl+qa+pai+++tgt++ +a ++ +++ +++ +a+s+a+ ++++ aa + + GSMUA_Achr4P27220_001 1 MPAACAARIFQLTRELGHKSDGETIKWLLEQAEPAIIAATGTGTVPAIAT------TVGGTLKIPTEAPSSAPVTSTSAAAADDPAAN 82 9*****************************************99999444......22333334444455544444444444444444 PP TCP 112 kesrakarara 122 e ak+r r+ GSMUA_Achr4P27220_001 83 GEDAAKKRRRK 93 45555555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.7E-19 | 1 | 71 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 20.134 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MPAACAARIF QLTRELGHKS DGETIKWLLE QAEPAIIAAT GTGTVPAIAT TVGGTLKIPT 60 EAPSSAPVTS TSAAAADDPA ANGEDAAKKR RRKLQPLRSG GGAVVAAGGA TGATSIPPGA 120 LWMVPPSAAV ATAPSSQAQI WTFPPGPQII NLASVQPVSA TGAAGSPAAP DSSDAAPAAA 180 RKPGVSVWDQ RMGHHLLSNS VPAGCPPPTF LIYIYIYIYI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 92 | KKRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009397838.1 | 3e-88 | PREDICTED: transcription factor PCF2-like | ||||
Swissprot | A2YXQ1 | 1e-37 | PCF2_ORYSI; Transcription factor PCF2 | ||||
Swissprot | Q6ZBH6 | 1e-37 | PCF2_ORYSJ; Transcription factor PCF2 | ||||
TrEMBL | M0SSI4 | 1e-153 | M0SSI4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P27220_001 | 1e-153 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3912 | 31 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-29 | TCP family protein |
Publications ? help Back to Top | |||
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