PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P25710_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 192aa    MW: 22122.5 Da    PI: 10.5691
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P25710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161764148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT eEd ll+ +++ +G g+W++ +   g+ R++k+c++rw++yl
  GSMUA_Achr4P25710_001 17 RGAWTREEDHLLIAYIRAHGEGCWRSLPMAAGLLRCGKSCRLRWNNYL 64
                           89******************************99*************7 PP
2Myb_DNA-binding45.41.8e-1470119147
                            TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                            rg +T  Edel+++++ +l ++     W++Ia++++ gRt++++k++w+++
  GSMUA_Achr4P25710_001  70 RGIFTMKEDELIIKLHSRLSNRqavaAWSLIAARLP-GRTDNEIKNHWNTH 119
                            678999******************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-22866IPR009057Homeodomain-like
PROSITE profilePS5129423.7271268IPR017930Myb domain
SuperFamilySSF466891.24E-2515116IPR009057Homeodomain-like
SMARTSM007172.4E-121666IPR001005SANT/Myb domain
PfamPF002491.0E-141764IPR001005SANT/Myb domain
CDDcd001677.49E-91964No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2267124IPR009057Homeodomain-like
PROSITE profilePS5129417.11969124IPR017930Myb domain
SMARTSM007174.4E-969122IPR001005SANT/Myb domain
PfamPF002492.1E-1270119IPR001005SANT/Myb domain
CDDcd001672.68E-873120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGAMVRSPCC EKAHIKRGAW TREEDHLLIA YIRAHGEGCW RSLPMAAGLL RCGKSCRLRW  60
NNYLRPGLRR GIFTMKEDEL IIKLHSRLSN RQAVAAWSLI AARLPGRTDN EIKNHWNTHV  120
RRKLLSRGTD PATHRRLIHE EKDTGRLLPY KQEKISSSSS SSSNREGLWN IQDYRCPYLN  180
LDLCLSPPSQ KP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-241512425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398917.11e-128PREDICTED: myb-related protein Zm38-like
SwissprotP200251e-76MYB38_MAIZE; Myb-related protein Zm38
TrEMBLM0SS321e-139M0SS32_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P25710_0011e-139(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.17e-72myb domain protein 7
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]