PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P25340_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 142aa    MW: 16678.3 Da    PI: 10.8796
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P25340_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151562148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W+++Ed++l + + ++G g W++++++ g++R++k+c++rw +yl
  GSMUA_Achr4P25340_001 15 KGLWSPDEDQRLREHILEHGHGYWSSVPAKSGLHRSGKSCRLRWINYL 62
                           678*******************************************97 PP
2Myb_DNA-binding52.11.5e-1669113248
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            g +++eE+e   ++++ lG++ W+ Ia +++ gRt++++k+ w++yl
  GSMUA_Achr4P25340_001  69 GVFSQEEEETVMKLHAILGNK-WSQIAMHLP-GRTDNEVKNQWNTYL 113
                            579******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-19963IPR009057Homeodomain-like
PROSITE profilePS5129416.4121062IPR017930Myb domain
SuperFamilySSF466891.72E-2813109IPR009057Homeodomain-like
SMARTSM007175.1E-111464IPR001005SANT/Myb domain
PfamPF002491.1E-131562IPR001005SANT/Myb domain
CDDcd001678.29E-81862No hitNo description
PROSITE profilePS5129423.74163117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2464117IPR009057Homeodomain-like
SMARTSM007177.4E-1567115IPR001005SANT/Myb domain
PfamPF002498.8E-1569113IPR001005SANT/Myb domain
CDDcd001674.06E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGRKTWEKPK AKHRKGLWSP DEDQRLREHI LEHGHGYWSS VPAKSGLHRS GKSCRLRWIN  60
YLRPGLKLGV FSQEEEETVM KLHAILGNKW SQIAMHLPGR TDNEVKNQWN TYLKKKIKTP  120
GFQPNLSKQL AQLSHKKLYL KF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-261511727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398010.19e-83PREDICTED: transcription factor LAF1-like
SwissprotQ8VZQ22e-52MYB61_ARATH; Transcription factor MYB61
TrEMBLM0SRZ51e-100M0SRZ5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P25340_0011e-101(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.17e-55myb domain protein 61
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]