PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P24610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 328aa    MW: 35664.3 Da    PI: 9.0264
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P24610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.55.1e-40126202177
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                            +Cq+egC+++l++ak+yhrrhkvCe+hska+vv v+gl+qrfCqqCsrfh l+efD++krsCr+rLa+hn+rrrk+q
  GSMUA_Achr4P24610_001 126 RCQAEGCSMELTHAKHYHRRHKVCEFHSKASVVNVAGLSQRFCQQCSRFHVLTEFDQGKRSCRKRLADHNRRRRKSQ 202
                            6**************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.4E-31122188IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.599124201IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-37125202IPR004333Transcription factor, SBP-box
PfamPF031109.8E-30127200IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MMLDYEWGNP AAVTPAMLLF GEENGGDDLV RQQATVFDHF AGHGIGSGGS TDFFPQAQPL  60
MAAAFFPAPT PASSTWHQRN GMEFPPLPAR IGLNLGVRTY FSSASPADGG GVVTGRVCRR  120
RTRIARCQAE GCSMELTHAK HYHRRHKVCE FHSKASVVNV AGLSQRFCQQ CSRFHVLTEF  180
DQGKRSCRKR LADHNRRRRK SQELATNTVT PIQNSDSSIT PIDTAVGNDL TEGDTILFTT  240
SSRNTTAPTA FTRCKPENES PVTHMSPPRV PSMMLPLSTT RMAKEMALGI GCSSVRAGAS  300
STAENSPPGA PFLVQLGEFG VHHRSFTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-291272001184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398934.10.0PREDICTED: squamosa promoter-binding-like protein 8
RefseqXP_018680542.10.0PREDICTED: squamosa promoter-binding-like protein 8
TrEMBLM0SRS20.0M0SRS2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P24610_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1946357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-49squamosa promoter binding protein-like 8