PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P23620_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 24412.6 Da PI: 9.8939 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 1e-20 | 18 | 68 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrdp gk+ r++lg+++taeeAa+a++aa+++++g GSMUA_Achr4P23620_001 18 THFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTYDTAEEAARAYDAAARQFRG 68 589*******.**********8...557***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.87E-19 | 18 | 76 | No hit | No description |
Pfam | PF00847 | 2.0E-14 | 18 | 68 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-36 | 19 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-22 | 19 | 76 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.775 | 19 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-32 | 19 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-11 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-11 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MATREKPAAG DEGGGKETHF RGVRKRPWGR YAAEIRDPGK KSRVWLGTYD TAEEAARAYD 60 AAARQFRGSK ARTNFPRPDA CPQSSTVESS SREAAVPPLA IPLPPSLDLD ILRRSGISGC 120 ARFPFQPYPA VATPAMQPGH RYFLFDTIVR SEKAAAAAAI SRHHLLTLYP PTIVADLNSA 180 IASGVQSDSD SSMVNLHRNH RSSPPHRMLP LDLDLNLPPP PEIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-21 | 16 | 76 | 2 | 63 | ATERF1 |
3gcc_A | 5e-21 | 16 | 76 | 2 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009398958.1 | 1e-122 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | M0SRH3 | 1e-162 | M0SRH3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P23620_001 | 1e-163 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3846 | 31 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 9e-24 | erf domain protein 9 |