PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P22960_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | TCP | ||||||||
Protein Properties | Length: 382aa MW: 41162.2 Da PI: 7.7577 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 120.2 | 2.4e-37 | 67 | 208 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec....eaesss 79 g+kdrhsk++T++g+RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai el+ + +++s e+ ++++s GSMUA_Achr4P22960_001 67 SGGKDRHSKVYTAKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAINELPPLdgfpklPQPSGDEVmkadPDVERS 154 689*************************************************************999988444443344556667777 PP TCP 80 ssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmrik 133 s++++++++ ++++ +s+ s++s+ s l+l++ ++ a + e+++ ++i+ GSMUA_Achr4P22960_001 155 YSQQQQQQQHPSTKSGCSSTSDTSKGSGLSLSNGANNVAAVAEGEENSGHNCIQ 208 777777777888888899999999999999999555444444455555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-35 | 68 | 189 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.971 | 69 | 127 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MDLENTHASK RSRTVGNGGQ ASKIGRKEHQ DEDEEDRERK GGGADAGRVA PWLHHPSSRI 60 FRVSRASGGK DRHSKVYTAK GLRDRRVRLS VSTAIQFYDL QDRLGYDQPS KAIEWLIKAA 120 AAAINELPPL DGFPKLPQPS GDEVMKADPD VERSYSQQQQ QQQHPSTKSG CSSTSDTSKG 180 SGLSLSNGAN NVAAVAEGEE NSGHNCIQKQ IPTAIYFGQA GLFAQSQKSQ QLPSGFSSQS 240 HFGNSCPMGM LPFNVAATGD HQEMQQFSLL QDNFFPVSAV AAMANYNLNF SISSGLAGFN 300 RGTLQSNSPA QMPQEHHHSH NHLQRLSSTV DGSNLQFFGA AAGSAAAATN AENQFPAGFG 360 DHLQLCYGDG YRQSDLKGKG KN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-26 | 74 | 128 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-26 | 74 | 128 | 1 | 55 | Putative transcription factor PCF6 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00639 | PBM | Transfer from Lj6g3v1946420 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009398327.1 | 0.0 | PREDICTED: transcription factor PCF6-like | ||||
Refseq | XP_009398328.1 | 0.0 | PREDICTED: transcription factor PCF6-like | ||||
Refseq | XP_009398329.1 | 0.0 | PREDICTED: transcription factor PCF6-like | ||||
TrEMBL | M0SRA7 | 0.0 | M0SRA7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P22960_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-44 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |