PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P21390_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | GATA | ||||||||
Protein Properties | Length: 235aa MW: 24955.2 Da PI: 9.6936 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.8 | 6.1e-18 | 164 | 198 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG+++++ +l GSMUA_Achr4P21390_001 164 CTHCLSQKTPQWRAGPLGPKTLCNACGVRFKSGRL 198 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.0E-14 | 158 | 212 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.5E-15 | 160 | 222 | No hit | No description |
PROSITE profile | PS50114 | 10.963 | 162 | 194 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.0E-13 | 162 | 196 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.52E-13 | 163 | 210 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 164 | 189 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.1E-15 | 164 | 198 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MDASKNSSSA ATSLLGDFTP GEGGEDGSLE WLSIYVEDCL SSAATSYTTF DPLPASAPPQ 60 TPNPKPAFKS LAVQAKARTK RRRRITPGNL SIDTFSTFHL TSSDPPLLHQ AHWLAESELI 120 LPKKEEEDKT PTPALGGGGG GGGGGGGGGG EEKLGKEGVH PRRCTHCLSQ KTPQWRAGPL 180 GPKTLCNACG VRFKSGRLLP EYRPAKSPTF VSYKHSNSHK KVMMMRTALL SSNPN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 84 | KRRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009398524.1 | 1e-172 | PREDICTED: GATA transcription factor 2-like | ||||
TrEMBL | M0SQV2 | 1e-171 | M0SQV2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P21390_001 | 1e-172 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5962 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45050.1 | 1e-35 | GATA transcription factor 2 |